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GB/T 34798-2017 English PDF

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GB/T 34798-2017: Formats specifications of nucleotide sequence database
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Basic data

Standard ID GB/T 34798-2017 (GB/T34798-2017)
Description (Translated English) Formats specifications of nucleotide sequence database
Sector / Industry National Standard (Recommended)
Classification of Chinese Standard A40
Classification of International Standard 07.080
Word Count Estimation 19,196
Date of Issue 2017-11-01
Date of Implementation 2018-05-01
Regulation (derived from) National Standard Announcement 2017 No. 29
Issuing agency(ies) General Administration of Quality Supervision, Inspection and Quarantine of the People's Republic of China, Standardization Administration of the People's Republic of China

GB/T 34798-2017: Formats specifications of nucleotide sequence database

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Formats specifications of nucleotide sequence database ICS 07.080 A40 National Standards of People's Republic of China Nucleic acid database sequence format specification Posted.2017-11-01 2018-05-01 implementation General Administration of Quality Supervision, Inspection and Quarantine of People's Republic of China China National Standardization Administration released Directory Foreword Ⅲ 1 Scope 1 2 Normative references 1 3 Terms and definitions 1 4 Abbreviations 2 5 Nucleic acid sequence format specification developed by the General 2 6 Nucleic acid sequence description specification 2 7 Nucleic acid sequence characterization specification 3 8 Nucleic acid sequence format specification 5 9 The overall format of the nucleic acid sequence file specification 5 Appendix A (Informative) Nucleotide Meaning Table 6 Appendix B (informative) nucleic acid-related features Key words Table 7 Appendix C (informative) codon table 10 Appendix D (Informative) Modified base Table 11 Appendix E (informative) qualifier Chinese and English comparison table 13 Appendix F (Informative) Example nucleic acid sequence files 14 Appendix G (informative) line capital letters meaning table 15 References 16

Foreword

This standard was drafted in accordance with the rules given in GB/T 1.1-2009. This standard was proposed by the National Biochemical Test Standardization Technical Committee (SAC/TC387) and centralized. This standard drafting unit. Shenzhen Huada Gene Research Institute, Shenzhen Huada Gene Technology Co., Ltd., Guangdong Provincial Institute of Standardization, Guangdong Quality Supervision and Inspection Institute. The main drafters of this standard. Wei Xiaofeng, Chen Fengzhen, Liu Ke, Du Jiating, Li Qian, Shen Wei Yan, Li Qiyuan, Xie Qiang, Juan Wang, Tan Jiali, Song 祚 Kun, Huang Jiang Yong. Nucleic acid database sequence format specification

1 Scope

This standard specifies the sequence format of the nucleic acid database, including the general rules for the specification of the characteristics of the nucleic acid sequence of the genome of the organism, the sequence description Format specification, sequence feature description specification and sequence format specification. This standard applies to the preparation of biological genomic nucleic acid sequence files.

2 Normative references

The following documents for the application of this document is essential. For dated references, only the dated version applies to this article Pieces. For undated references, the latest edition (including all amendments) applies to this document. GB/T 29859 bioinformatics terminology ZC0003 Nucleotide and/or Amino Acid Sequence Listing and Sequence Listing Electronic Document Standards

3 Terms and definitions

GB/T 29859 defined and the following terms and definitions apply to this document. 3.1 Nucleic acid database nucleicaciddatabase Nucleic acid sequence as the basic content, and annotated nucleic acid sequence information database. 3.2 Coding sequence codingsequence The sequence encoding a protein product starts at the start codon and finally ends at the codon. 3.3 Sequence assembly sequenceassembly Short sequences of the genomic long sequence break down to form shorter sequences that, through the help of algorithms and computers, assemble these short sequences into A complete and ordered sequence of processes. 3.4 Methylation methylation An important modification of proteins and nucleic acids that regulate gene expression and shut down. 3.5 Identifier identifier Relatively unique code in a system. 3.6 Location The relative coordinate position of one or more bases over another longer base. 3.7 Feature qualifier The word used to further characterize a certain type of sequence.

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